PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G114800.1
Common NameB456_010G114800, LOC105774496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 208aa    MW: 22854.7 Da    PI: 8.6595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G114800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18555155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Gorai.010G114800.1  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                        59*****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-21563No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
PfamPF008472.4E-11655IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-20663IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-32664IPR001471AP2/ERF domain
SMARTSM003803.9E-37669IPR001471AP2/ERF domain
PRINTSPR003673.3E-10718IPR001471AP2/ERF domain
PRINTSPR003673.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPKAAHPAE QNARGGGDDD DDDRSPLPPK ALAELLNAKL RKCCKDQSPS LTCLRLDTDN  120
AHIGVWQKRA GNRSSSNWVM RVELGNKKVD TPASGDRRTL SPGSSTTADE IEAGNLMGEE  180
DRIALQMIEE LLNWNCPVTS STSLIGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16263163ATERF1
3gcc_A4e-16263163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3934769e-98GQ393476.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0441 SSR marker CGR5436 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452456.11e-153PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9581e-80SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0D2R6661e-153A0A0D2R666_G
STRINGPOPTR_0018s13130.17e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.24e-72ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]